Index

A | B | C | D | E | F | G | H | I | K | M | N | O | P | R | S | T | U | V | W | X

A

ABOTMNode (in module botmpy.nodes.spike_sorting)
activate() (FilterBankNode method)
AdaptiveBayesOptimalTemplateMatchingNode (class in botmpy.nodes.spike_sorting)
AlignmentNode (class in botmpy.nodes.alignment)
append() (MxRingBuffer method)
append_xi_buf() (FilterNode method)
ArtifactDetectorNode (class in botmpy.nodes.artifact_detector)

B

BaseTimeSeriesCovarianceEstimator (class in botmpy.common.covariance_estimator)
BayesOptimalTemplateMatchingNode (class in botmpy.nodes.spike_sorting)
BOTMNode (in module botmpy.nodes.spike_sorting)
botmpy.__init__ (module)
botmpy.common (module)
botmpy.common.covariance_estimator (module)
botmpy.common.funcs_filterutil (module)
botmpy.common.funcs_general (module)
botmpy.common.funcs_spike (module)
botmpy.common.matrix_ops (module)
botmpy.common.ringbuffer (module)
botmpy.common.spike_alignment (module)
botmpy.common.util (module)
botmpy.nodes (module)
botmpy.nodes.alignment (module)
botmpy.nodes.artifact_detector (module)
botmpy.nodes.base_nodes (module)
botmpy.nodes.cluster (module)
botmpy.nodes.filter_bank (module)
botmpy.nodes.linear_filter (module)
botmpy.nodes.prewhiten (module)
botmpy.nodes.smoothing (module)
botmpy.nodes.spike_detection (module)
botmpy.nodes.spike_sorting (module)
build_block_toeplitz_from_xcorrs() (in module botmpy.common.covariance_estimator)
build_idx_set() (in module botmpy.common.covariance_estimator)

C

calc_filter() (FilterNode method)
capacity (MxRingBuffer attribute)
ce (FilterBankNode attribute)
(FilterNode attribute)
chunk_data() (in module botmpy.common.funcs_spike)
clear() (MxRingBuffer method)
ClusteringNode (class in botmpy.nodes.cluster)
cmx_init() (TimeSeriesCovE static method)
coloured_loading() (in module botmpy.common.matrix_ops)
component_divergence() (BayesOptimalTemplateMatchingNode method)
create_filter() (FilterBankNode method)
cs (FilterBankNode attribute)

D

deactivate() (FilterBankNode method)
det (AdaptiveBayesOptimalTemplateMatchingNode attribute)
diagonal_loading() (in module botmpy.common.matrix_ops)
dict_list_to_ndarray() (in module botmpy.common.funcs_general)
dict_sort_ndarrays() (in module botmpy.common.funcs_general)
dimension (MxRingBuffer attribute)

E

EnergyNotCalculatedError
epochs_from_binvec() (in module botmpy.common.funcs_spike)
epochs_from_spiketrain() (in module botmpy.common.funcs_spike)
epochs_from_spiketrain_set() (in module botmpy.common.funcs_spike)
events (ThresholdDetectorNode attribute)
extend() (MxRingBuffer method)
extend_xi_buf() (FilterNode method)
extract_spikes() (in module botmpy.common.funcs_spike)

F

f (FilterNode attribute)
f_conc (FilterNode attribute)
fill() (MxRingBuffer method)
fill_xi_buf() (FilterNode method)
filter_calculation() (botmpy.nodes.linear_filter.FilterNode class method)
(botmpy.nodes.linear_filter.MatchedFilterNode class method)
(botmpy.nodes.linear_filter.NormalisedMatchedFilterNode class method)
filter_set (FilterBankNode attribute)
FilterBankError
FilterBankNode (class in botmpy.nodes.filter_bank)
FilterBankSortingNode (class in botmpy.nodes.spike_sorting)
FilterError
FilterNode (class in botmpy.nodes.linear_filter)
flush() (MxRingBuffer method)

G

gauss_heat_kernel() (HomoscedasticClusteringNode static method)
get_aligned_spikes() (in module botmpy.common.spike_alignment)
get_capacity() (MxRingBuffer method)
get_ce() (FilterBankNode method)
(FilterNode method)
get_chan_set() (FilterBankNode method)
(TimeSeriesCovE method)
get_cmx() (BaseTimeSeriesCovarianceEstimator method)
get_cmx_loaded() (BaseTimeSeriesCovarianceEstimator method)
get_cond() (BaseTimeSeriesCovarianceEstimator method)
get_cut() (in module botmpy.common.funcs_spike)
get_det() (AdaptiveBayesOptimalTemplateMatchingNode method)
get_dimension() (MxRingBuffer method)
get_epochs() (ThresholdDetectorNode method)
get_events() (ThresholdDetectorNode method)
get_extracted_events() (ThresholdDetectorNode method)
get_f() (FilterNode method)
get_f_conc() (FilterNode method)
get_filter_set() (FilterBankNode method)
get_fragmentation() (ArtifactDetectorNode method)
get_has_plot() (VERBOSE method)
get_has_print() (VERBOSE method)
get_icmx() (BaseTimeSeriesCovarianceEstimator method)
get_icmx_loaded() (BaseTimeSeriesCovarianceEstimator method)
get_idx() (in module botmpy.common.funcs_general)
get_idx_for() (FilterBankNode method)
get_is_full() (MxRingBuffer method)
get_is_verbose() (VERBOSE method)
get_nc() (FilterBankNode method)
(FilterNode method)
(TimeSeriesCovE method)
get_nf() (FilterBankNode method)
get_noise_prior() (BayesOptimalTemplateMatchingNode method)
get_nonartefact_epochs() (ArtifactDetectorNode method)
(SpectrumArtifactDetector method)
get_snr() (FilterNode method)
get_spike_prior() (BayesOptimalTemplateMatchingNode method)
get_spike_prior_bias() (BayesOptimalTemplateMatchingNode method)
get_svd() (BaseTimeSeriesCovarianceEstimator method)
get_tau_align_energy() (in module botmpy.common.spike_alignment)
get_tau_align_max() (in module botmpy.common.spike_alignment)
get_tau_align_min() (in module botmpy.common.spike_alignment)
get_tau_for_alignment() (in module botmpy.common.spike_alignment)
get_template_set() (FilterBankNode method)
get_tf() (FilterBankNode method)
(FilterNode method)
get_tf_max() (TimeSeriesCovE method)
get_whitening_op() (BaseTimeSeriesCovarianceEstimator method)
get_xcorrs() (FilterBankNode method)
get_xcorrs_at() (FilterBankNode method)
get_xi() (FilterNode method)
get_xi_conc() (FilterNode method)

H

has_plot (VERBOSE attribute)
has_print (VERBOSE attribute)
HomoscedasticClusteringNode (class in botmpy.nodes.cluster)

I

invert_epochs() (in module botmpy.common.funcs_spike)
is_cond_ok() (BaseTimeSeriesCovarianceEstimator method)
is_full (MxRingBuffer attribute)
is_initialised() (BaseTimeSeriesCovarianceEstimator method)
is_invertable() (AlignmentNode method)
(ClusteringNode method)
(SmoothingNode method)
is_invertible() (FilterBankNode method)
(FilterNode method)
(PrewhiteningNode static method)
(PrewhiteningNode2 static method)
(ThresholdDetectorNode method)
is_trainable() (AlignmentNode method)
(ClusteringNode method)
(FilterBankNode method)
(FilterNode method)
(PrewhiteningNode static method)
(PrewhiteningNode2 static method)
(SmoothingNode method)
(ThresholdDetectorNode method)
is_verbose (VERBOSE attribute)

K

kteo() (in module botmpy.common.funcs_filterutil)

M

MatchedFilterNode (class in botmpy.nodes.linear_filter)
matrix_argmax() (in module botmpy.common.matrix_ops)
matrix_argmin() (in module botmpy.common.matrix_ops)
matrix_cond() (in module botmpy.common.matrix_ops)
mcvec_from_conc() (in module botmpy.common.funcs_general)
mcvec_to_conc() (in module botmpy.common.funcs_general)
mean() (MxRingBuffer method)
merge_epochs() (in module botmpy.common.funcs_spike)
mteo() (in module botmpy.common.funcs_filterutil)
MxRingBuffer (class in botmpy.common.ringbuffer)

N

nc (FilterBankNode attribute)
(FilterNode attribute)
(TimeSeriesCovE attribute)
new_chan_set() (TimeSeriesCovE method)
nf (FilterBankNode attribute)
Node (class in botmpy.nodes.base_nodes)
noise_prior (BayesOptimalTemplateMatchingNode attribute)
NONE (VERBOSE attribute)
NormalisedMatchedFilterNode (class in botmpy.nodes.linear_filter)

O

overlaps() (in module botmpy.common.funcs_spike)

P

PCANode (class in botmpy.nodes.base_nodes)
PLOT (VERBOSE attribute)
plot() (HomoscedasticClusteringNode method)
(ThresholdDetectorNode method)
plot_buffer_to_axis() (FilterNode method)
plot_filter_set() (FilterBankNode method)
plot_sorting() (FilterBankSortingNode method)
plot_sorting_waveforms() (FilterBankSortingNode method)
plot_template_set() (FilterBankNode method)
plot_template_set2() (FilterBankNode method)
plot_xvft() (FilterBankNode method)
posterior_prob() (BayesOptimalTemplateMatchingNode method)
PrewhiteningNode (class in botmpy.nodes.prewhiten)
PrewhiteningNode2 (class in botmpy.nodes.prewhiten)
PRINT (VERBOSE attribute)

R

resampled_mean_dist() (AdaptiveBayesOptimalTemplateMatchingNode method)
reset() (BaseTimeSeriesCovarianceEstimator method)
(TrainingResetMixin method)
(XcorrStore method)
reset_history() (FilterBankNode method)
(FilterNode method)
reset_rates() (FilterBankNode method)
ResetNode (class in botmpy.nodes.base_nodes)
rm_chan_set() (TimeSeriesCovE method)

S

SDAbsNode (class in botmpy.nodes.spike_detection)
SDIntraNode (class in botmpy.nodes.spike_detection)
SDKteoNode (class in botmpy.nodes.spike_detection)
SDMteoNode (class in botmpy.nodes.spike_detection)
SDPeakNode (class in botmpy.nodes.spike_detection)
SDSqrNode (class in botmpy.nodes.spike_detection)
set_capacity() (MxRingBuffer method)
set_ce() (FilterBankNode method)
(FilterNode method)
set_chan_set() (FilterBankNode method)
set_events() (ThresholdDetectorNode method)
set_noise_prior() (BayesOptimalTemplateMatchingNode method)
set_spike_prior() (BayesOptimalTemplateMatchingNode method)
set_spike_prior_bias() (BayesOptimalTemplateMatchingNode method)
set_tf_max() (TimeSeriesCovE method)
shifted_matrix_sub() (in module botmpy.common.funcs_general)
sinc_interp1d() (in module botmpy.common.spike_alignment)
smooth() (in module botmpy.nodes.smoothing)
SmoothingNode (class in botmpy.nodes.smoothing)
snr (FilterNode attribute)
snr_maha() (in module botmpy.common.funcs_spike)
snr_peak() (in module botmpy.common.funcs_spike)
snr_power() (in module botmpy.common.funcs_spike)
sorting2gdf() (FilterBankSortingNode method)
sortrows() (in module botmpy.common.funcs_general)
SpectrumArtifactDetector (class in botmpy.nodes.artifact_detector)
spike_prior (BayesOptimalTemplateMatchingNode attribute)
spike_prior_bias (BayesOptimalTemplateMatchingNode attribute)
spikes_u() (FilterBankSortingNode method)

T

template_set (FilterBankNode attribute)
ten2vec() (in module botmpy.common.funcs_general)
tf (FilterBankNode attribute)
(FilterNode attribute)
tf_max (TimeSeriesCovE attribute)
threshold_detection() (in module botmpy.common.funcs_spike)
ThresholdDetectorNode (class in botmpy.nodes.spike_detection)
TimeSeriesCovE (class in botmpy.common.covariance_estimator)
tolist() (MxRingBuffer method)
TrainingResetMixin (class in botmpy.nodes.base_nodes)

U

update() (BaseTimeSeriesCovarianceEstimator method)
(PrewhiteningNode method)

V

vec2ten() (in module botmpy.common.funcs_general)
VERBOSE (class in botmpy.common.util)

W

white_noise_init() (TimeSeriesCovE static method)

X

xcorr() (in module botmpy.common.funcs_general)
xcorrs (FilterBankNode attribute)
XcorrStore (class in botmpy.common.covariance_estimator)
xi (FilterNode attribute)
xi_conc (FilterNode attribute)
xi_vs_f() (in module botmpy.common.funcs_filterutil)

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